Gepasi

Procedure

1) Rename title.

2) Add reactions.

3) Make sure the number of metabolites matches the reactions.

4) Click "kinetics."

5) Choose "mass action (reversible)."

6) Enter k1 and k2 values for each reaction.

7) Choose "metabolite."

8) Enter concentrations for each metabolite.

9) Click "time course" choose run.

To Save Data

1) Click the task tab.

2) Choose "edit."

3) Add metabolites and time.

4) Rename the file time course.

5) Click "run."

Example Graphs

Figure 1. Graph of the HRP phases over a time span of 0.02 seconds.

Figure 2. Graph of the HRP phases with the HRP2 rate increased to 1e^5.

Figure 3. Graph of the HRP phases with the HRP2 rate increased to 1e^6.