Difference between revisions of "Lignin Monomers: Oxidation and Degradation"

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===Oxidation of Lignin Monomers===
 
===Oxidation of Lignin Monomers===
Beaker reactions with varying reaction conditions were completed to analyze the oxidation of each monomer. For each monomer, 100 mL of a 2 mM standard solution of the monomer (purchased from Sigma Aldrich) was made using 50/50 dioxane/pH 5 buffer. The pH 5 buffer was a phosphate-citrate buffer (purchased from Sigma Aldrich). Three reactions were then completed with varying concentrations of hydrogen peroxide in the presence of a constant HRP concentration in scintillation vials. The first reaction was composed of 5 mL of the 2 mM substrate, 10 μL of hydrogen peroxide (1 mM final concentration hydrogen peroxide) and 5 μL of HRP. The second reaction was composed of 5 mL of the 2 mM substrate, 5 μL of hydrogen peroxide (0.5 mM final concentration hydrogen peroxide) and 5 μL of HRP. The third reaction was composed of 5 mL of the 2 mM substrate, 5 μL of hydrogen peroxide (0.25 mM final concentration hydrogen peroxide) and 5 μL of HRP. These reactions were then analyzed on the HPLC for oxidation products of each monomer and compared.
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Beaker reactions with varying reaction conditions were completed to analyze the oxidation of each monomer. For each monomer, 100 mL of a 2 mM standard solution of the monomer (purchased from Sigma Aldrich) was made using 50/50 dioxane/pH 5 buffer. The pH 5 buffer was a phosphate-citrate buffer (purchased from Sigma Aldrich). Three reactions were then completed with varying concentrations of hydrogen peroxide in the presence of a constant HRP concentration in scintillation vials. The first reaction was composed of 5 mL of the 2 mM substrate, 10 μL of 0.5M hydrogen peroxide (1 mM final concentration hydrogen peroxide) and 5 μL of HRP. The second reaction was composed of 5 mL of the 2 mM substrate, 5 μL of 0.5M hydrogen peroxide (0.5 mM final concentration hydrogen peroxide) and 5 μL of HRP. The third reaction was composed of 5 mL of the 2 mM substrate, 5 μL of 0.5M hydrogen peroxide (0.25 mM final concentration hydrogen peroxide) and 5 μL of HRP. These reactions were then analyzed on the HPLC for oxidation products of each monomer and compared.
  
 
===Analysis of Monomer Oxidation===
 
===Analysis of Monomer Oxidation===
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===Oxidation of Lignin Monomers Using Immobilized HRP===
 
===Oxidation of Lignin Monomers Using Immobilized HRP===
 
====Beaker reactions with immobilized HRP====
 
====Beaker reactions with immobilized HRP====
Beaker reactions were completed using the immobilized HRP and analyzed on the HPLC. The reactions had varying concentrations of hydrogen peroxide. A 2 mM standard was made for each monomer with a volume of 100 using 50/50 dioxane/pH 5 buffer. Before the immobilized HRP was used, it was rinsed twice with MOPS buffer. The first reaction was composed of 5 mL of substrate, 10 µL hydrogen peroxide (1 mM final concentration hydrogen peroxide), and 50 µL of immobilized HRP. The second reaction was composed of 5 mL of substrate, 5 µL of hydrogen peroxide (0.5 mM final concentration hydrogen peroxide), and 50 µL of immobilized HRP. The third reaction was composed of 5 mL of substrate, 2.5 µL of hydrogen peroxide (0.25 mM final concentration hydrogen peroxide), and 50 µL of immobilized HRP. These reactions were then analyzed on the HPLC for possible oxidation products. The results were then compared to previously collected HPLC data using HRP, opposed to immobilized HRP.
+
Beaker reactions were completed using the immobilized HRP and analyzed on the HPLC. The reactions had varying concentrations of hydrogen peroxide. A 2 mM standard was made for each monomer with a volume of 100 using 50/50 dioxane/pH 5 buffer. Before the immobilized HRP was used, it was rinsed twice with MOPS buffer. The first reaction was composed of 5 mL of substrate, 10 µL of 0.5M hydrogen peroxide (1 mM final concentration hydrogen peroxide), and 50 µL of immobilized HRP. The second reaction was composed of 5 mL of substrate, 5 µL of 0.5M hydrogen peroxide (0.5 mM final concentration hydrogen peroxide), and 50 µL of immobilized HRP. The third reaction was composed of 5 mL of substrate, 2.5 µL of 0.5M hydrogen peroxide (0.25 mM final concentration hydrogen peroxide), and 50 µL of immobilized HRP. These reactions were then analyzed on the HPLC for possible oxidation products. The results were then compared to previously collected HPLC data using HRP, opposed to immobilized HRP.
  
 
====Flat Cell Reactions with Immobilized Enzyme====
 
====Flat Cell Reactions with Immobilized Enzyme====

Revision as of 20:59, 27 April 2020

Abstract

The lignin polymer is synthesized via oxidative coupling of three basic monomers: p-coumaryl alcohol, coniferyl alcohol, and sinapyl alcohol. These three monomers each possess a phenol group that stabilizes the radical intermediate generated during the oxidation reaction. Although some literature exists showing the ESR spectra of these short-lived radical intermediates, we have revisited these intermediates using a combination of experimental techniques [HPLC and immobilized enzyme-ESR technique (IE-ESR)] and computational approaches [B3YLP/ESR-II and WINSIM]. Two radicals dimerize together to create lignan, which is biologically active and currently being tested for pharmacological properties. HPLC was used to study the oxidation of coniferyl alcohol, the monomeric lignan, and validate the formation of dimers. The mechanisms of this dimer formation were also studied to better understand the oxidative coupling of the lignin monomers.

Introduction

COMING SOON

Lignin

Lignan

Lignan is formed from the oxidative coupling of two lignin monomers. The dimers are often linked between the beta-carbons on the side chain of each monomer. Many of the dimers stated often in literature possess this linking structure. These dimers have biological activity, whereas the larger structure of lignin does not. This allows them to have potential healths benefits associated with them. Some of these benefits are anti-mubial, anti-inflammatory, and antioxidant. The relationship between allergies and lignan has also been studied. It might be related to having an anti-histamine effect on allergy symptoms.

Research is currently being done to study the relationship between cancer and lignan. Breast cancer has been studied the most, but other cancers such as prostate and ovarian are being researched. Currently there are no conclusions regarding those cancers, as the research is in beginning stages. Many studies are centered around whether consumption of flax seeds correlates to a reduction in the risk of breast cancer, as well as the mortality. The reason flax seeds are being researched is because they have the highest concentration of lignans. With breast cancer, it was found flax seed consumption did decrease the risk of breast cancer, as well as the mortality of breast cancer, in post-menopausal women. This is believed to be because the lignan acts as a competitive inhibitor to estrogen. Some lignans, such as matairesinol and lariciresinol, have structures similar to estrogen. This allows them to bind to the estrogen receptor on the cancer cell, therefore blocking estrogen from binding. This prevents further growth of the cancer.

Experimental Methods

Oxidation of Lignin Monomers

Beaker reactions with varying reaction conditions were completed to analyze the oxidation of each monomer. For each monomer, 100 mL of a 2 mM standard solution of the monomer (purchased from Sigma Aldrich) was made using 50/50 dioxane/pH 5 buffer. The pH 5 buffer was a phosphate-citrate buffer (purchased from Sigma Aldrich). Three reactions were then completed with varying concentrations of hydrogen peroxide in the presence of a constant HRP concentration in scintillation vials. The first reaction was composed of 5 mL of the 2 mM substrate, 10 μL of 0.5M hydrogen peroxide (1 mM final concentration hydrogen peroxide) and 5 μL of HRP. The second reaction was composed of 5 mL of the 2 mM substrate, 5 μL of 0.5M hydrogen peroxide (0.5 mM final concentration hydrogen peroxide) and 5 μL of HRP. The third reaction was composed of 5 mL of the 2 mM substrate, 5 μL of 0.5M hydrogen peroxide (0.25 mM final concentration hydrogen peroxide) and 5 μL of HRP. These reactions were then analyzed on the HPLC for oxidation products of each monomer and compared.

Analysis of Monomer Oxidation

The reactions and the standards were analyzed on the HPLC using an acetonitrile (ACN) and water gradient for 25 minutes. The first 10 minutes were ran at 100% water, 10-20 minutes were ran at an 80% ACN/20% water gradient, and the remaining 5 minutes at 100% water.

Immobilization of Enzymes

An immobilization of peroxidase from horseradish (HRP) was completed using Affi-Gel® 10. This procedure is centered around the isolectric point of the enzyme. The immobilization was completed using a MOPS buffer (pH 7.0) and about 1 mL of Affi-Gel® 10 beads.

Setup of Enzyme Immobilization

Made 0.190 mM immobilized enzyme solution (abs 1.94) using a simple apparatus. A Poly-Prep® Chromatography Column (Bio-Rad Laboratories, Inc. product 731-1550) and 3-way stopcock (Bio-Rad Laboratories, Inc. product 732-8103) were used. The column was secured to a ring stand and the 3-way stopper was attached. A 5 mL lure-lock syringe was attached to the 3-way stopcock at a 90° angle. The initial HRP solution is a 5 mM solution of peroxidase from horseradish and MOPS buffer. About 1 mL of Affi-Gel® 10 beads were added to the column attached to the ring stand and washed with water. They were then washed with MOPS buffer. The peroxidase and buffer solution in the eppendorf tube was added to the column containing the Affi-Gel® 10 beads and mixed by inverting and flicking the bottom of the column. The column was sealed and placed on a LabQuake® for an hour.

Oxidation of Lignin Monomers Using Immobilized HRP

Beaker reactions with immobilized HRP

Beaker reactions were completed using the immobilized HRP and analyzed on the HPLC. The reactions had varying concentrations of hydrogen peroxide. A 2 mM standard was made for each monomer with a volume of 100 using 50/50 dioxane/pH 5 buffer. Before the immobilized HRP was used, it was rinsed twice with MOPS buffer. The first reaction was composed of 5 mL of substrate, 10 µL of 0.5M hydrogen peroxide (1 mM final concentration hydrogen peroxide), and 50 µL of immobilized HRP. The second reaction was composed of 5 mL of substrate, 5 µL of 0.5M hydrogen peroxide (0.5 mM final concentration hydrogen peroxide), and 50 µL of immobilized HRP. The third reaction was composed of 5 mL of substrate, 2.5 µL of 0.5M hydrogen peroxide (0.25 mM final concentration hydrogen peroxide), and 50 µL of immobilized HRP. These reactions were then analyzed on the HPLC for possible oxidation products. The results were then compared to previously collected HPLC data using HRP, opposed to immobilized HRP.

Flat Cell Reactions with Immobilized Enzyme

A flat cell was loaded with glass wool, sand, and immobilized enzyme. Glass wool was lightly packed into the bottom neck of the flat cell. A small amount of sand was then mixed with nanopure water and added into the flat cell about 2 mm above the glass wool using a plastic 1 mL syringe. About 50 μL of immobilized enzyme is added on top of the glass wool and sand to fill most of the cavity of the flat cell. The pH 5 buffer was ran through the flat cell for about 10 minutes. A 1 mM ferulic acid, 1 mM hydrogen peroxide solution in 50/50 dioxane/pH 5 buffer was made. This solution was put in a 60 mL plastic syringe and flow controlled through the flat cell at 0.25 mL/minute, 0.5 mL/minute, 1 mL/minute, and 2 mL/minute. Flow was collected for each rate and analyzed on the HPLC. The same procedure was completed for p-coumaric acid.

EPR Analysis with Immobilized Enzyme

A flat cell was loaded with glass wool, sand, and immobilized enzyme using the procedure outlined above. A 10 mM ferulic acid solution in 50/50 dioxane/pH 7.4 buffer was made. Hydrogen peroxide was added to a concentration of 10 mM before EPR analysis. The solution was placed in a 60 mL plastic syringe and flow was controlled. Flow was analyzed at rates of 0.5 mL/minute, 1 mL/minute, and 2 mL/minute. The parameters for the program were modulation amplitude 0.5 G, sweep width 40.0 G, and center field at 3492.0 G.

Results

Discussion

Conclusion

References