Difference between revisions of "WebMO Electrostatic Potential maps"

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:- Click “New Job”, then “Create New Job”. The Build Molecule window opens,  
 
:- Click “New Job”, then “Create New Job”. The Build Molecule window opens,  
 
:- Build C<sub>6</sub>H<sub>6</sub> using the "fragments:
 
:- Build C<sub>6</sub>H<sub>6</sub> using the "fragments:
::* from the menu bar, select Build: fragments
+
:::... from the menu bar, select Build: Fragments
 
:::- Category: --> Rings
 
:::- Category: --> Rings
 
:::- Fragment: --> Benzene
 
:::- Fragment: --> Benzene

Revision as of 14:39, 23 April 2020

(4/23/20, bes)

Exercise 5: Electrostatic Potential Maps

Electrostatic potential maps show the electron distribution (ie. the composite wavefunction for all electrons) within a molecular frame. Did you get that ? <--these pictures are a visual representation of the composite electron wavefunctions.

The figure below shows an example of the electrostatic potential maps for LiH, H2, and HF.

  • H2, the electrons are evenly distributed among the two H-atoms (green = neutral),
  • LiH, being an ionic compound, the 1s valence electron is transferred to the H-atom showing a Li+/positive charge (blue - on left) and an H-/negative charge (red - on right),
  • HF, being a covalent bond with the highly electronegative F-atom showing showing a H+/positive charge (blue - on left) and F-/negative charge (red - on right).

Note: these maps are "surface" maps...electrostatic potential surface maps...and represent what the electron distribution looks like from a external perspective.

Using WebMO/Gaussian please complete the following table by optimizing the geometry based the stated level of theory and basis set:

Activity 1: Generating an Electrostatic Potential Map for Benzene (C6H6)

Note: this calculation is a 2-step process:

1) Optimize Geometry, then,
2) Calculate Molecular Orbitals.
- Click “New Job”, then “Create New Job”. The Build Molecule window opens,
- Build C6H6 using the "fragments:
... from the menu bar, select Build: Fragments
- Category: --> Rings
- Fragment: --> Benzene
- OK
...then a single click in the drawing area will generate a benzene ring.
- Choose Clean-Up > Comprehensive – Mechanics,
- Symmetrize the molecule...(click "red" D6h* <-- 10th item down in left side menu),
- Click the blue “continue” arrow in the lower right side of the Build Molecule window.
Screen Shot 2020-04-09 at 12.59.11 PM.png
- Setup the job as shown below and submit:
Screen Shot 2020-04-09 at 1.02.26 PM.png
- Once the job is complete, click on the hyperlinked name to open the “View Job” window.
- Click the "New Job Using This Geometry" button at the bottom of the window, then click the blue “continue” arrow,
- Setup the job as shown below and submit:
Screen Shot 2020-04-09 at 1.06.25 PM.png
- Once the job is complete, click on the hyperlinked name to open the “View Job” window.
- Scroll down to the Molecular Orbitals table. Using the energy values and occupancy as your judge, identify the HOMO and LUMO. View these orbitals by click on the magnifying glass icon. The orbitals can be rotated by clicking and dragging in the viewer window.