Difference between revisions of "Copasi"
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(Created page with "==Introduction== Copasi is an open source software package for modeling and simulation of biochemical reaction networks. Copasi can import and export SBML (Systems Biology Ma...") |
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# Click the "Model" tab from the side of the home page. | # Click the "Model" tab from the side of the home page. | ||
| − | # Rename the model. | + | #2 Rename the model. |
| − | # Adjust the units according to your needs. | + | #3 Adjust the units according to your needs. |
| − | # Write any comments in the large text box | + | #4 Write any comments in the large text box |
| − | # Choose the biochemical tab from the side underneath the "Model" tab. Choose "Compartment" from the drop down list. | + | #5 Choose the biochemical tab from the side underneath the "Model" tab. Choose "Compartment" from the drop down list. |
| − | # Rename the compartment and and double click on the compartment. | + | #6 Rename the compartment and and double click on the compartment. |
| − | # Once the compartment is adjusted to your needs, click on the "Reactions" tab. | + | #7 Once the compartment is adjusted to your needs, click on the "Reactions" tab. |
| − | # Double-Click the reaction to rename and then double-click the reaction again to put in the chemical equation. Using the equal sign means the reaction is reversible. | + | #8 Double-Click the reaction to rename and then double-click the reaction again to put in the chemical equation. Using the equal sign means the reaction is reversible. |
| − | # Press the new button to create a new reaction. | + | #9 Press the new button to create a new reaction. |
==Time Course Simulation== | ==Time Course Simulation== | ||
Revision as of 15:03, 1 July 2019
Introduction
Copasi is an open source software package for modeling and simulation of biochemical reaction networks. Copasi can import and export SBML (Systems Biology Markup Language), which is a file format for exchanging models with other systems biology software.
Model Creation
- Click the "Model" tab from the side of the home page.
- 2 Rename the model.
- 3 Adjust the units according to your needs.
- 4 Write any comments in the large text box
- 5 Choose the biochemical tab from the side underneath the "Model" tab. Choose "Compartment" from the drop down list.
- 6 Rename the compartment and and double click on the compartment.
- 7 Once the compartment is adjusted to your needs, click on the "Reactions" tab.
- 8 Double-Click the reaction to rename and then double-click the reaction again to put in the chemical equation. Using the equal sign means the reaction is reversible.
- 9 Press the new button to create a new reaction.